For the most part, God lets the Evolution Factory handle reality. The Evolution Factory is one of his better projects. Brilliant really.
After all, if You were God and were going to create and run an entire universe, You wouldn’t really want to be running around it all the time doing hands-on alterations on everything from quarks to galaxies. Micromanagement is boring and doing a bunch of handwork on the entire universe for all eternity can get old really quick. It’s much better just to create a process that will essentially hunt and peck along for order across billions of years and, sooner or later, come up with a life form that can both apprehend You and make a hot-fudge sundae at the same time.